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Data Engineer, R&D Informatics

Pioneering Intelligence

Salary not specified
Sep 29, 2025
Cambridge, MA, US
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Pioneering Medicines is seeking to build a world-class biopharmaceutical R&D capability focused on conceiving and developing life-changing treatments for patients by harnessing the power of Flagship's scientific platforms and applying those innovative approaches to serious diseases with unmet medical need.

Requirements

  • Strong experience building data pipelines using Python and SQL.
  • Proficiency with AWS data services (e.g., S3, Glue, Redshift, RDS, Athena).
  • Familiarity with modern data frameworks (e.g., Airflow, dbt, Spark).
  • Experience working with both structured and unstructured data (CSV, JSON, Parquet, etc.).
  • Working knowledge of CI/CD and Git-based development workflows.
  • Experience supporting bioinformatics, cheminformatics, or clinical data workflows.
  • Familiarity with data visualization tools (e.g., Tableau, Spotfire) or notebook environments (e.g., Jupyter, RStudio).

Responsibilities

  • Build, maintain, and optimize data pipelines in AWS to support scientific and operational use cases.
  • Partner with scientists, bioinformaticians, and analysts to ingest, transform, and structure data for analytics and modeling.
  • Contribute to the development of scalable data lakes, marts, and warehouse solutions.
  • Implement automation and CI/CD for data workflows to ensure reproducibility and scalability.
  • Monitor and support production pipelines, troubleshoot issues, and drive continuous improvement.
  • Collaborate with application teams to integrate data systems with scientific and operational tools.
  • Ensure data security, quality, and compliance with regulatory and privacy standards.

Other

  • A builder’s mindset and a passion for solving complex data problems.
  • Curiosity and a desire to learn scientific domains and business drivers.
  • A sense of urgency and a bias toward action.
  • Commitment to quality, reliability, and reproducibility in engineering work.
  • 3+ years of experience in data engineering, ideally in the life sciences or healthcare domain.
  • Flagship Pioneering is committed to equal employment opportunity regardless of race, color, ancestry, religion, sex, national origin, sexual orientation, age, citizenship, marital status, disability, gender identity or Veteran status.