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Senior Software Engineer/Bioinformatician - Bfx Ops

GeneDx

$183,633 - $229,580
Apr 23, 2025
Remote, US
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GeneDx is seeking a Senior Software Engineer/Bioinformatician to lead technical design and implementation efforts to improve their bioinformatics workflow and bioinformatics algorithms.

Requirements

  • Proficiency in Python; comfortable with working in other similar languages.
  • Experience building/consuming API calls/responses and ETL functions.
  • Experience with AWS services, Docker, Kubernetes, Helm, CI/CD, automated testing, and data logging suites/toolsets.
  • Good understanding of general software engineering patterns, best practices, and methods.
  • Knowledge of bioinformatics pipeline scalability, observability, and cost efficiency.
  • Deep understanding of technical implementation of complex variant calling - structural variants beyond copy number.
  • Familiarity with samtools, gatk, picard, vcftools, bedtools.

Responsibilities

  • Design, write, and maintain high quality and robust software applications and services to meet team goals.
  • Lead analytical validation efforts in support of new pipeline development and existing pipeline improvements.
  • Collaborate with teammates and product managers in developing development roadmaps and sprint planning.
  • Assist in establishment and adherence to robust and compliant software development best practices.
  • Participate in software quality testing and validation.
  • Play a role in cross-functional development with other teams as required.
  • Contribute to continuous improvement in the operating model of the team.

Other

  • Excellent communication skills; ability to work collaboratively with other development teams.
  • Prior experience working in a CAP/CLIA regulated setting.
  • Prior experience preparing for a CAP/CLIA inspection.
  • PhD strongly preferred.
  • Paid Time Off (PTO)
  • Health, Dental, Vision and Life insurance
  • 401k Retirement Savings Plan
  • Employee Discounts
  • Voluntary benefits